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Below is a list of the algorithms created so far from each CNS CIShell-powered tool. There are two lists, one organizes the algorithms by their function in the tools and the other organizes the algorithms alphabetically. Some pages are currently somewhat sparse, as of March 2011.

If you would like to view an index of algorithms in a particular CNS CIShell-powered tool, see the Sci2 Algorithm Index, the NWB Manual, or the EpiC Manual.

Source code for these algorithms is browsable in the CNS Center repository, see Document & Developer Resources (direct link to repository is currently down. Should be available soon as of March 2011).

Algorithms organized by function

Data Preparation

Database

ISI
NSF
General
Generic-CSV

Preprocessing

General

Temporal

Geospatial

Topical

Networks

Analysis

Temporal

Geospatial

Topical

Networks

Unweighted & Undirected
Weighted & Undirected
Unweighted & Directed
Weighted & Directed
Discrete Network Dynamics

Modeling

Networks

Visualization

General

  • GnuPlot

Temporal

Geospatial

Networks

Simulation

Single-Population

Network

R

Scientometrics

Readers

Facebook Reader

Flickr Reader

Google Citation Reader

Twitter Reader

XML to CSV Converter

Algorithms organized alphabetically

Labels
  • None
Page: Adjacency Transitivity Page: Aggregate Data Page: Annotate K-Coreness Page: Annotate K-Coreness (Unweighted & Directed) Page: Arc Reciprocity Page: Attach Citation Indices from Google Scholar Page: Attach Citation Table from Google Scholar Page: Average Shortest Path Page: Average Weight vs End-point Degree Page: Barabási-Albert Scale-Free Page: Bing Geocoder Page: Bipartite Network Graph Page: Blondel Community Detection Page: Burst Detection Page: Can Page: Chord Page: Circular Hierarchy Page: Clustering Coefficient Page: Congressional District Geocoder Page: Convert to Generic Publication Page: Create an R Instance Page: Create Document Source Merging Table Page: Create Merging Table Page: Custom Graph Query Page: Custom Table Query Page: Degree & Strength Page: Degree Distribution Page: Delete Isolates Page: Detect Duplicate Nodes Page: Diameter Page: Dichotomize Page: DrL (VxOrd) Page: Dyad Reciprocity Page: Edge Sampling Page: Extract Author Bibliographic Coupling Network Page: Extract Author Citation Network Page: Extract Author Co-Citation Network Page: Extract Author Paper Network Page: Extract Authors Page: Extract Authors by Year Page: Extract Authors by Year for Burst Detection Page: Extract Awards Page: Extract Bipartite Network Page: Extract Co-Author Network Page: Extract Co-Author Network (Text Files) Page: Extract Co-Occurrence Network Page: Extract Co-PI Network Page: Extract Directed Network Page: Extract Document Bibliographic Coupling Network Page: Extract Document Citation Network (Core and References) Page: Extract Document Citation Network (Core Only) Page: Extract Document Co-Citation Network Page: Extract Document Co-Citation Network (Core and References) Page: Extract Document Co-Citation Network (Core Only) Page: Extract Documents Page: Extract Documents by Year for Burst Detection Page: Extract Document Source Bibliographic Coupling Network Page: Extract Document Source Citation Network (Core and References) Page: Extract Document Source Citation Network (Core Only) Page: Extract Document Source Co-Citation Network (Core and References) Page: Extract Document Source Co-Citation Network (Core Only) Page: Extract Document Sources Page: Extract Edges Above or Below Value Page: Extract Investigators Page: Extract K-Core Page: Extract K-Core (Unweighted & Directed) Page: Extract Keywords Page: Extract Longitudinal Summary Page: Extract New ISI Keywords by Year Page: Extract New ISI Keywords by Year for Burst Detection Page: Extract Nodes Above or Below Value Page: Extract Organizations Page: Extract Original Author Keywords by Year Page: Extract Original Author Keywords by Year for Burst Detection Page: Extract Paper Citation Network Page: Extract Raw Tables from Database Page: Extract Reference Co-Occurrence (Bibliographic Coupling) Network Page: Extract References by Year Page: Extract References by Year for Burst Detection Page: Extract Top Edges Page: Extract Top N% Records Page: Extract Top Nodes Page: Extract Top N Records Page: Extract Weighted Document-Document Network Page: Extract Word Co-Occurrence Network Page: Extract ZIP Code Page: Facebook Access Token Page: Facebook Mutual Friends Page: Fast Pathfinder Network Scaling Page: Flickr Reader Page: Force Directed with Annotation (prefuse beta) Page: Fruchterman-Reingold with Annotation (prefuse beta) Page: Geocoder Page: Geospatial Visualization Page: Gephi Page: Get a Table from R Page: Global Connected Components Page: Google Citation User ID Search Algorithm Page: GUESS Page: HITS Page: Horizontal Bar Graph Page: Horizontal Bar Graph (not included version) Page: Hypergrid Page: Indegree Distribution Page: K-Nearest Neighbor Page: K-Nearest Neighbor (Java) Page: Load Existing Database Page: Load ISI File Into Database Page: Load ISI File with 'ISI flat format' Page: Load NSF File Into Database Page: Louvain Multilevel Refinement Community Detection Page: Lowercase, Tokenize, Stem, and Stopword Text Page: Map of Science via 554 Fields Page: Map of Science via Journals Page: Match References to Papers Page: Merge 2 Networks Page: Merge Document Sources Page: Merge Entities Page: Merge Identical ISI People Page: Merge Identical NSF People Page: MST-Pathfinder Network Scaling Page: Multipartite Joining Page: Nearest Neighbor Degree Page: Network Analysis Toolkit (NAT) Page: Node Betweenness Centrality Page: Node Degree Page: Node Indegree Page: Node Outdegree Page: Node Sampling Page: Outdegree Distribution Page: PageRank Page: Pathfinder Network Scaling Page: PRU Page: Radial Tree or Graph (prefuse alpha) Page: Radial Tree or Graph with Annotations (prefuse beta) Page: Random Graph Page: Randomize Weights Page: Read citation indices for a given set of authors Page: Reconcile Journal Names Page: Remove Edge Attributes Page: Remove ISI Duplicate Records Page: Remove Node Attributes Page: Remove Rows with Multitudinous Fields Page: Remove Self Loops Page: Run Rgui Page: Send a Table to R Page: Shortest Path Distribution Page: Single Node In-Out Degree Correlations Page: Louvain Community Detection Page: Slice Table by Time Page: SLM Community Detection Page: Snowball Sampling (N nodes) Page: Specified (Prefuse beta) Page: Strength Distribution Page: Strength vs Degree Page: Strong Component Clustering Page: Suggest ISI People Merges Page: Symmetrize Page: TARL (Topics, Aging and Recursive Linking) Page: Temporal Bar Graph Page: Tree Map (prefuse beta) Page: Tree View (prefuse beta) Page: Trim by Degree Page: Twitter Reader Page: Update Network by Merging Nodes Page: Watts-Strogatz Clustering Coefficient Page: Watts Strogatz Clustering Coefficient over K Page: Watts-Strogatz Small World Page: Weak Component Clustering Page: Weight Distribution Page: Workflow Module Page: Workflow Tracker Page: XML to CSV Algorithm Page: Yahoo! Geocoder